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ARGs-OAP v3.0: Antibiotic-Resistance Gene Database Curation and Analysis Pipeline Optimization Article

Xiaole Yin, Xiawan Zheng, Liguan Li, An-Ni Zhang, Xiao-Tao Jiang, Tong Zhang

Engineering 2023, Volume 27, Issue 8,   Pages 234-241 doi: 10.1016/j.eng.2022.10.011

Abstract: The new version (v3.0) of the widely used ARGs online analysis pipeline (ARGs-OAP) has made significantimprovements to both the reference database—the structured ARGs (SARG) database—and theSARG has been enhanced with sequence curation to improve annotation reliability, incorporate emergingIn addition, the ARGs-OAP has been improved with adjusted quantification methods, simplified tool implementationThe ARGs-OAP v3.0 with an improved database and analysis pipeline will benefit academia, governmental

Keywords： SARG database ARGs-OAP     Antibiotic-resistance genes     Environmental metagenome     Quantification    

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Degradation of extracellular genomic, plasmid DNA and specific antibiotic resistance genes by chlorination

Menglu Zhang, Sheng Chen, Xin Yu, Peter Vikesland, Amy Pruden

Frontiers of Environmental Science & Engineering 2019, Volume 13, Issue 3, doi: 10.1007/s11783-019-1124-5

Abstract: listitem>

Typical chlorine doses will likely effectively diminish extracellular DNA and ARGs

Plasmid DNA/ARGs were less readily broken down

Keywords： Antibiotic resistance     Antibiotic resistance genes (ARGs)     Extracellular DNA/ARGs     Chlorination    

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Case modifying of high-speed cutting database based on CSP and similarity theory

Kejun XIANG, Zhanqiang LIU, Xing AI

Frontiers of Mechanical Engineering 2009, Volume 4, Issue 1,   Pages 83-87 doi: 10.1007/s11465-009-0014-0

Abstract: By analyzing the reasoning of a high-speed cutting database system, a case modifying method is put forwardapplied to case modifying, which is possible to automatically modify cases in the high-speed cutting database

Keywords： high-speed cutting database     case modifying     CSP     similarity calculation    

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A comprehensive information database (CID) of breast cancer patients in China

Shuai Li, Li Fu

Frontiers of Medicine 2012, Volume 6, Issue 2,   Pages 212-216 doi: 10.1007/s11684-012-0185-7

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Intelligent high-speed cutting database system development

XIANG Kejun, LIU Zhanqiang, AI Xing

Frontiers of Mechanical Engineering 2008, Volume 3, Issue 2,   Pages 180-188 doi: 10.1007/s11465-008-0038-x

Abstract: reasoning methods frequently used, the hybrid reasoning is employed to build the high-speed cutting databaseFinally, the component parts and working process of the high-speed cutting database system on the basis

Keywords： control     hybrid reasoning     process     component     uncontrolled    

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Research on integrating customization design for mechanical product

TAI Ligang, LI Dianqi, ZHONG Tingxiu, LI Zhi

Frontiers of Mechanical Engineering 2007, Volume 2, Issue 1,   Pages 89-93 doi: 10.1007/s11465-007-0015-9

Abstract: system which combines various technologies such as Web, knowledge based engineering (KBE), engineering databaseThe whole system is set up on the base of engineering database technology, integrating Product Data Management

Keywords： engineering database     product     Management     database technology     knowledge    

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A prototype online database-enabled design framework for wind analysis/design of low-rise buildings

Dae Kun KWON,Ahsan KAREEM,Deepak KUMAR,Yukio TAMURA

Frontiers of Structural and Civil Engineering 2016, Volume 10, Issue 1,   Pages 121-130 doi: 10.1007/s11709-015-0329-3

Abstract: This study presents a development of an advanced cyberbased database-enabled design module for low-risePresently, the DEDM-LR hosts an aerodynamic database developed by the Tokyo Polytechnic University (TPU

Keywords： wind loads     low-rise building     pressure measurement     aerodynamics     building design     structural response     building codes     information technology (IT)    

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Next-Generation Database Benchmark for Financial Scenarios

Jing Yinan, Zhang Hanbing, Li Zhixin , Wang Xiaoyang , Wu Jie , Chai Hongfeng

Strategic Study of CAE 2022, Volume 24, Issue 4,   Pages 121-132 doi: 10.15302/J-SSCAE-2022.04.014

Abstract: However, the existing database benchmarks face many challenges when dealing with database testing inbased on the OceanBase database, and moved the bank’s debit card data from the DB2 database toMigrating data from the database in use to a new database in a highly efficient and low-cost manner toThere is an urgent need for a financial database benchmark to uniformly evaluate database performanceEvolution of database benchmarks.

Keywords： financial industry     bank     financial data     database     benchmark    

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Review of research and development of computer-aided Kansei Engineering

Li LIN, Chengqi XUE

Frontiers of Mechanical Engineering 2009, Volume 4, Issue 2,   Pages 125-128 doi: 10.1007/s11465-009-0023-z

Abstract: Kansei Engineering is an important research approach and has become the hotspot of research in design fields. The concept of Kansei Engineering is introduced based on the investigation of related literatures. The working process and the key technology of computer-aided Kansei Engineering systems are discussed. Finally, the development trend of Kansei Engineering is outlined according to the development of computer and networking technology.

Keywords： Kansei words     design elements     system     database    

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Loop theory and applications to some key problems of kinematic structure of kinematic chains

Huafeng DING, Zhen HUANG

Frontiers of Mechanical Engineering 2009, Volume 4, Issue 3,   Pages 276-283 doi: 10.1007/s11465-009-0061-6

Abstract: code remains the same even if the drawing modes and labeling ways of a chain are changed, and an atlas database

Keywords： Loop theory     kinematic chains     isomorphism     atlas database    

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The liver tissue bank and clinical database in China

Yuan YANG, Yi-Min LIU, Ming-Yue WEI, Wei-Ping ZHOU, Hong-Yang WANG, Meng-Chao WU, Yi-Fei WU, Jun-Hui GAO, Lei LIU,

Frontiers of Medicine 2010, Volume 4, Issue 4,   Pages 443-447 doi: 10.1007/s11684-010-0190-7

Abstract: in 2008 in China to make well-characterized and optimally preserved liver tumor tissue and clinical databaseThe clinical database and sample store can be managed easily and correctly with the data management platformWe believe that the high-quality samples with detailed information database will become the cornerstone

Keywords： liver neoplasm     tissue bank     information systems     standardization    

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Mitigating microbiological risks of potential pathogens carrying antibiotic resistance genes and virulence factors in receiving rivers: Benefits of wastewater treatment plant upgrade

Frontiers of Environmental Science & Engineering 2023, Volume 17, Issue 7, doi: 10.1007/s11783-023-1682-4

Abstract:

● Abundance of MAGs carrying ARG-VF pairs unchanged in rivers after WWTP upgrade.

Keywords： Wastewater treatment plant upgrade     Antibiotic resistance genes (ARGs)     Virulence factors (VFs)     Gene    

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Slope stability analysis based on big data and convolutional neural network

Yangpan FU; Mansheng LIN; You ZHANG; Gongfa CHEN; Yongjian LIU

Frontiers of Structural and Civil Engineering 2022, Volume 16, Issue 7,   Pages 882-895 doi: 10.1007/s11709-022-0859-4

Abstract: This study proposes a slope database generation method based on the LEM.Samples were amplified from 40 typical slopes, and a sample database consisting of 20000 slope samplesThe sample database for slopes covered a wide range of slope geometries and soil layers’ physical andThe CNN trained with this sample database was then applied to the stability prediction of 15 real slopesMoreover, the prediction accuracy of the CNN trained by the sample database for slope stability analysis

Keywords： slope stability     limit equilibrium method     convolutional neural network     database for slopes     big data    

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Model of a Distributed Database Server With Redundant Structure and Its Load Balance

Tian Junfeng,Liu Yuling,Du Ruizhong

Strategic Study of CAE 2004, Volume 6, Issue 6,   Pages 35-42

Abstract: This paper introduces the model of structure and work for a distributed database server system, and discussions

Keywords： distributed database     redundancy     load balance     mobile agent     performance analysis    

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Process Planning Support System for Green Manufacturing and its application

HE Yan, LIU Fei, CAO Huajun, ZHANG Hua

Frontiers of Mechanical Engineering 2007, Volume 2, Issue 1,   Pages 104-109 doi: 10.1007/s11465-007-0018-6

Abstract: The database of the GMPPSS was used to provide plentiful information on resources consumption and environmentalimpact in manufacturing processes, which consisted of process attribute database, inventory database, machine database, tool database, and the cutting fluid database.

Keywords： environment     selection     GMPPSS     consumption     database    

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Title Author Date Type Operation

ARGs-OAP v3.0: Antibiotic-Resistance Gene Database Curation and Analysis Pipeline Optimization

Xiaole Yin, Xiawan Zheng, Liguan Li, An-Ni Zhang, Xiao-Tao Jiang, Tong Zhang

Journal Article

Degradation of extracellular genomic, plasmid DNA and specific antibiotic resistance genes by chlorination

Menglu Zhang, Sheng Chen, Xin Yu, Peter Vikesland, Amy Pruden

Journal Article

Case modifying of high-speed cutting database based on CSP and similarity theory

Kejun XIANG, Zhanqiang LIU, Xing AI

Journal Article

A comprehensive information database (CID) of breast cancer patients in China

Shuai Li, Li Fu

Journal Article

Intelligent high-speed cutting database system development

XIANG Kejun, LIU Zhanqiang, AI Xing

Journal Article

Research on integrating customization design for mechanical product

TAI Ligang, LI Dianqi, ZHONG Tingxiu, LI Zhi

Journal Article

A prototype online database-enabled design framework for wind analysis/design of low-rise buildings

Dae Kun KWON,Ahsan KAREEM,Deepak KUMAR,Yukio TAMURA

Journal Article

Next-Generation Database Benchmark for Financial Scenarios

Jing Yinan, Zhang Hanbing, Li Zhixin , Wang Xiaoyang , Wu Jie , Chai Hongfeng

Journal Article

Review of research and development of computer-aided Kansei Engineering

Li LIN, Chengqi XUE

Journal Article

Loop theory and applications to some key problems of kinematic structure of kinematic chains

Huafeng DING, Zhen HUANG

Journal Article

The liver tissue bank and clinical database in China

Yuan YANG, Yi-Min LIU, Ming-Yue WEI, Wei-Ping ZHOU, Hong-Yang WANG, Meng-Chao WU, Yi-Fei WU, Jun-Hui GAO, Lei LIU,

Journal Article

Mitigating microbiological risks of potential pathogens carrying antibiotic resistance genes and virulence factors in receiving rivers: Benefits of wastewater treatment plant upgrade

Journal Article

Slope stability analysis based on big data and convolutional neural network

Yangpan FU; Mansheng LIN; You ZHANG; Gongfa CHEN; Yongjian LIU

Journal Article

Model of a Distributed Database Server With Redundant Structure and Its Load Balance

Tian Junfeng,Liu Yuling,Du Ruizhong

Journal Article

Process Planning Support System for Green Manufacturing and its application

HE Yan, LIU Fei, CAO Huajun, ZHANG Hua

Journal Article